Transcript 28123 | MetamORF

Transcript

ID CARD

MetamORF ID

28123

ENSMUST00000154778

Name

H2afy-208

Strand

Biotype

processed_transcript

Start-end positions

56104430-56136361

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:26914

Aliases

ENSMUSG00000015937,
H2AF12M, H2afy, Macroh2a1,
MGI:1349392, mH2a1, NCBI:26914,
OFF:Macroh2a1

Chr 13

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
941896	75	AAG ...	KYR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
942502	108	AAG ...	KKG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
335664	48	GTG ...	VYM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
28163	243	GTG ...	VDE ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
782015	210	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
27229	138	CTG ...	LIC ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
26817	171	CTG ...	LTM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
28330	174	CTG ...	LGT ...	Ribo-seq	CTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
461860	54	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
942023	144	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
943042	189	ATC ...	IHP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
463137	177	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
463954	33	CTG ...	LCT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
28122	189	TTG ...	LWT ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
464120	162	GTG ...	VVP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
463537	66	GTG ...	VRS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
28139	276	CTG ...	LVT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, Neutrophil, Spleen_B_cell, Testis
942728	123	ATC ...	IFP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
27682	147	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
463846	84	GTG ...	VGG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
27196	183	CTG ...	LGL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
27317	186	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
26786	189	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
463007	195	CTG ...	LCI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
27521	60	GTG ...	VGA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
461769	78	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
27181	177	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
942823	30	CTG ...	LEY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
943593	93	ATC ...	IKK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
942708	153	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1042141	261	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
943633	87	ATC ...	IHQ ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
27720	165	ATG ...	MCP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
28291	207	TTG ...	LFY ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, Neutrophil, Spleen_B_cell, Testis
27627	219	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
27466	99	CTG ...	LWD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
942619	168	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
464306	60	CTG ...	LAM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
27568	114	GTG ...	VGR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC
1042053	288	TTG ...	LYL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
27256	177	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3

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