Transcript 281185

Transcript

ID CARD

MetamORF ID

281185

ENSMUST00000149495

Name

Ebp-204

Strand

Biotype

retained_intron

Start-end positions

8189875-8192898

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:13595

Aliases

AI255399,
Ebp, ENSMUSG00000031168, MGI:107822,
mSI, NCBI:13595, OFF:Ebp,
Pabp, SI, Td

Chr X

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1391453	30	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
629832	249	GTG ...	VPN ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, R1E
633804	219	CTG ...	LVG ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, R1E
1481174	72	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
276806	63	TTG ...	LEL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
281117	39	TTG ...	LSS ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, E14, Liver, MEF
284748	291	TTG ...	LHP ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E
1034491	123	CTG ...	LAL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, R1E
629655	183	GTG ...	VIT ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, R1E
631872	261	CTG ...	LDN ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, R1E
628866	102	GTG ...	VCT ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E
633748	171	CTG ...	LLS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E
442755	105	CTG ...	LVC ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
281449	30	TTG ...	LLC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
633410	69	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
7216	39	CTG ...	LAQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF
633668	267	CTG ...	LKL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, R1E
631533	168	TTG ...	LSS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E
1277386	195	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
283355	108	GTG ...	VLV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
1279120	300	ACG ...	TVP ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
631934	81	GTG ...	VIE ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E
631208	57	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver
632056	117	TTG ...	LCW ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E
281680	63	CTG ...	LVL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
276157	57	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
279365	93	GTG ...	VYL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver

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