Transcript 276175

Transcript

ID CARD

MetamORF ID

276175

ENSMUST00000156096

Name

Cask-212

Strand

Biotype

protein_coding

Start-end positions

13517080-13786030

CDS Start-stop positions

13522171-

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:12361

Aliases

Cask,
DXPri1, DXRib1, ENSMUSG00000031012,
LIN-2, MGI:1309489, mLin-2,
NCBI:12361, OFF:Cask, Pals3

Chr X

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
634717	123	TTG ...	LVT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
287201	156	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
285645	78	GTG ...	VMQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
280407	48	GTG ...	VIL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Brain
629670	42	CTG ...	LYL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
632965	33	ATG ...	MPT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	3T3
634558	192	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
285283	114	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
286098	84	TTG ...	LCQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
635003	159	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
632387	84	TTG ...	LHC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
635430	186	TTG ...	LNM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
278070	72	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
284216	33	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
630519	84	TTG ...	LEH ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	3T3
279641	51	CTG ...	LSY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain
634407	141	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
634536	93	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
276174	42	TTG ...	LCQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, Brain
628355	36	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
286437	126	ATG ...	MGT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
633890	117	TTG ...	LPW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
286045	168	GTG ...	VFS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain
630818	33	CTG ...	LLK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	3T3
635715	51	ATG ...	MEL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
629765	72	CTG ...	LWC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	3T3
630830	42	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
283613	48	ATG ...	MYQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
284591	33	GTG ...	VQT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, Brain
634762	120	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
284876	33	TTG ...	LKA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
634336	165	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
634592	108	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
632750	30	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
628560	36	TTG ...	LVW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
634550	45	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
279170	63	ATG ...	MRM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Brain
633981	42	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
286730	126	ATG ...	MTK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
629169	54	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
634901	180	ATG ...	MIQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
634265	69	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
629070	30	CTG ...	LKG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
631638	66	ATG ...	MGT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
286911	72	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, Brain

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