Transcript 275826

Transcript

ID CARD

MetamORF ID

275826

ENSMUST00000123096

Name

Ddx3x-202

Strand

Biotype

retained_intron

Start-end positions

13287284-13288852

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:13205

Aliases

D1Pas1-rs2,
Ddx3, Ddx3x, ENSMUSG00000000787,
Fin14, MGI:103064, NCBI:13205,
OFF:Ddx3x

Chr X

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
442903	36	ATG ...	MLF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
280031	69	TTG ...	LRN ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, NSC, v6-5
89252	111	ATG ...	MSR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, v6-5
277356	93	CTG ...	LEA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC, v6-5
283680	81	GTG ...	VQK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, NSC, v6-5
276000	81	CTG ...	LGL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Neutrophil, NSC, v6-5
279064	60	ATG ...	MMT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Neutrophil, NSC, v6-5
7152	114	GTG ...	VMS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, v6-5
7322	99	ATG ...	MED ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF, NSC
89544	78	TTG ...	LSL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
280681	57	ATG ...	MTF ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, NSC, v6-5

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