Transcript 275711

Transcript

ID CARD

MetamORF ID

275711

ENSMUST00000141702

Name

Maged1-206

Strand

Biotype

retained_intron

Start-end positions

94537675-94538826

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:94275

Aliases

2810433C11Rik,
5430405L04Rik, Dlixin, Dlxin-1,
Dlxin1, DXBwg1492e, ENSMUSG00000025151,
MAGE-D1, Maged1, MGI:1930187,
NCBI:94275, NRAGE, OFF:Maged1

Chr X

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1117164	93	CTG ...	LRD ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, v6-5
275710	51	ATG ...	MSI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
1034102	63	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
89404	81	CTG ...	LKE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, v6-5
1118605	75	TTG ...	LVK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Liver, v6-5
1334548	33	CTG ...	LDP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1119787	123	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
278025	54	CTG ...	LMS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, NSC, v6-5
1333707	36	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
89024	54	CTG ...	LYI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, v6-5
1391527	63	GTG ...	VPH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1119187	69	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1116758	33	TTG ...	LSA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1118906	36	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
278257	105	CTG ...	LTG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5

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