Transcript 275531

Transcript

ID CARD

MetamORF ID

275531

ENSMUST00000137892

Name

Uba1-205

Strand

Biotype

processed_transcript

Start-end positions

20678077-20681200

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:22201

Aliases

A1S9,
ENSMUSG00000001924, MGI:98890, NCBI:22201,
OFF:Uba1, Sbx, Uba1,
Ube-1, Ube1x

Chr X

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
278072	255	GTG ...	VMA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
284013	270	TTG ...	LHL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1333927	201	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
628945	63	ATG ...	MNL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
280492	228	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1334528	246	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
278298	84	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
1335108	177	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
277530	180	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
631805	57	TTG ...	LKA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, v6-5
1334235	90	CTG ...	LKH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
629972	108	TTG ...	LWS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
632085	150	TTG ...	LPL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
1335542	210	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1335036	174	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1333721	177	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
280453	201	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
275530	192	GTG ...	VQR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1334747	234	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
283351	264	CTG ...	LDY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
1334187	204	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1334561	216	TTG ...	LTG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
631889	51	CTG ...	LDP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
442193	54	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver

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