Transcript 2736 | MetamORF

Transcript

ID CARD

MetamORF ID

2736

ENSMUST00000026425

Name

Pa2g4-201

Strand

Biotype

protein_coding

Start-end positions

128557766-128565934

CDS Start-stop positions

128558906-128565827

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:18813

Aliases

38kDa,
AA672939, Ebp1, ENSMUSG00000025364,
MGI:894684, NCBI:18813, OFF:Pa2g4,
Pa2g4, Plfap

Chr 10

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7803	54	CTG ...	LQV ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
4222	69	ATG ...	MSL ...	Ribo-seq	ATG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
240147	42	ATG ...	MKR ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, NSC, R1E, v6-5
444878	105	ATG ...	MSY ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1282838	84	ACG ...	TFS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7762	81	CTG ...	LFS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell
531972	39	CTG ...	LGR ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
418195	45	CTG ...	LWL ...	Ribo-seq	CTG	moderate	15	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, C2C12, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1084846	57	TTG ...	LLP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
638775	75	ATG ...	MRR ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, R1E, v6-5
766105	51	CTG ...	LKL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1662991	93	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
522155	45	CTG ...	LTC ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
901134	147	ATC ...	IEE ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, MEF
7728	93	ATG ...	MER ...	Ribo-seq	ATG		16	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, v6-5
440741	114	GTG ...	VPN ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
2735	36	CTG ...	LPY ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Skin_tumor, v6-5
768187	54	GTG ...	VLK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, R1E
418487	33	AGG ...	RET ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
560347	48	CTG ...	LKH ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, v6-5
517387	30	CTG ...	LRW ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
7692	96	TTG ...	LME ...	Ribo-seq	TTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
7878	78	ATG ...	MSL ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Glioma, Liver, MEF, MESC, NSC, R1E, Skin_tumor, v6-5
1575827	45	AAG ...	KTS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1106843	33	CTG ...	LCV ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
768562	45	CTG ...	LPY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
516646	60	GTG ...	VVP ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
3157	42	CTG ...	LKL ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
509360	54	GTG ...	VAG ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
577205	54	TTG ...	LPS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
554393	57	ATG ...	MQD ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
3184	45	GTG ...	VLK ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
975178	66	AGG ...	RVN ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
829865	30	TTG ...	LLT ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, MEF, Neutrophil, NSC, R1E, v6-5
617809	63	GTG ...	VNL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, v6-5
913679	33	AGG ...	RSK ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
534125	51	TTG ...	LSL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
7751	87	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, Skin_tumor, Spleen_B_cell

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