Transcript 27292 | MetamORF

Transcript

ID CARD

MetamORF ID

27292

ENSMUST00000021574

Name

Gtpbp4-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

8972480-8996050

CDS Start-stop positions

8987948-8995996

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:69237

Aliases

2610028C09Rik,
Crfg, ENSMUSG00000021149, Gtpbp3,
Gtpbp4, MGI:1916487, NCBI:69237,
NGB, Nog1, OFF:Gtpbp4

Chr 13

ORFs

84 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
669436	57	TTG ...	LRC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
1301133	42	AGG ...	RDF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
783009	66	ATG ...	MHL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
1305401	93	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1306010	81	ACG ...	TFN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
1301800	102	ATA ...	IPQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1304651	39	ATA ...	IFS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
465101	30	TTG ...	LGN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, NSC, Spleen_B_cell, v6-5
465269	33	ATG ...	MLG ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS NMD Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
1305300	57	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF
668858	66	ATG ...	MIR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, Glioma, Liver, MEF, MESC, R1E
462048	84	ATG ...	MWT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1137403	33	TTG ...	LVW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, R1E, v6-5
465235	54	GTG ...	VSF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Liver, MEF, R1E, Spleen_B_cell, v6-5
1301818	39	AGG ...	RLK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
464421	48	ATG ...	MRC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
1135954	48	CTG ...	LLG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Downstream NMD sORF	MEF, v6-5
1301466	114	AAG ...	KNL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1305941	57	ATA ...	INR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
464464	33	ATG ...	MFL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF, Spleen_B_cell
464735	117	GTG ...	VSR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
782395	42	TTG ...	LLG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, R1E, v6-5
465219	30	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Spleen_B_cell
1305180	66	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1301597	156	AGG ...	RQE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
463289	78	TTG ...	LDE ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, MEF, R1E, Spleen_B_cell, v6-5
1305162	57	ATT ...	ITT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
671786	33	ATG ...	MVI ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
1305199	78	ATT ...	ITM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1302247	54	ATT ...	ITM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
784580	162	GTG ...	VCF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, v6-5
27291	30	GTG ...	VIL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, R1E, Testis, v6-5
1304461	87	AAG ...	KKV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
782473	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, R1E
784207	183	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, MEF
1302649	60	AAG ...	KKT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
462176	138	GTG ...	VSR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, R1E, Spleen_B_cell
1135737	30	GTG ...	VWT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, MEF, R1E, v6-5
465286	144	ATG ...	MQS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, BMDC, MEF, R1E, Spleen_B_cell, v6-5
462511	30	CTG ...	LCP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
462283	108	CTG ...	LFH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF, Spleen_B_cell
462573	54	GTG ...	VYY ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
464496	75	TTG ...	LIQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, Spleen_B_cell, v6-5
463750	84	GTG ...	VWT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, MEF, R1E, Spleen_B_cell
673467	36	GTG ...	VMF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, MEF
942470	45	ATT ...	ITT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
333513	36	ATG ...	MTV ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Brain, E14, Glioma, Liver, MEF, MESC, v6-5
465230	57	CTG ...	LCP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
464150	90	ATG ...	MQA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
1305616	72	ATC ...	IQI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
465060	180	TTG ...	LVW ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
464982	45	GTG ...	VGI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, NSC, Spleen_B_cell, v6-5
1303393	45	ATC ...	ICS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
464832	87	CTG ...	LFH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, MEF, Spleen_B_cell, v6-5
461947	33	ATG ...	MLL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Spleen_B_cell
1305715	96	ATT ...	IYP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1301748	147	ATT ...	IYP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
672094	48	ATG ...	MTD ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
1302909	81	ATT ...	IHL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1305535	135	AGG ...	RQE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1137664	87	ATG ...	MWT ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD Overlapping sORF	E14, Glioma, Liver, MEF, MESC, R1E, v6-5
333027	36	CTG ...	LKD ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1611709	42	TTG ...	LGT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, R1E
1134569	45	CTG ...	LGS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream NMD sORF	E14, MEF, v6-5
1611646	45	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, R1E
464694	177	GTG ...	VWT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
783634	39	TTG ...	LGT ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	B_cell, MEF, R1E, v6-5
1305720	54	ATA ...	ILP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
462568	165	ATG ...	MQS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, E14, MEF, R1E, Spleen_B_cell, v6-5
784489	168	CTG ...	LFV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, E14, MEF, v6-5
464018	30	TTG ...	LLI ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Spleen_B_cell, v6-5
668266	75	CTG ...	LRN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, R1E
1136789	30	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	MEF, v6-5
464984	72	ATG ...	MTD ...	Ribo-seq	ATG		13	sORFs_org_Mouse Johnstone2016	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1348855	69	ATG ...	MHL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, R1E
464820	195	ATG ...	MRC ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1709142	39	ATG ...	MIT ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
465395	165	TTG ...	LDE ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, R1E, Spleen_B_cell, v6-5
1302089	78	ACG ...	TFN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
464489	63	CTG ...	LRK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Spleen_B_cell, v6-5
1137860	51	TTG ...	LPK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E, v6-5
1305840	60	ATC ...	ILS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
942978	63	ATA ...	IRY ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
1302866	54	ACG ...	TRR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

Export data