Transcript 272 | MetamORF

Transcript

ID CARD

MetamORF ID

272

ENSMUST00000203267

Name

Hspa4l-202

Strand

Biotype

retained_intron

Start-end positions

40745583-40758596

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:18415

Aliases

94kDa,
AI461691, APG-1, ENSMUSG00000025757,
Hspa4l, MGI:107422, NCBI:18415,
OFF:Hspa4l, Osp94

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54441	117	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
52647	84	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
53757	48	CTG ...	LYI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
52007	129	GTG ...	VGD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
52948	99	ATG ...	MGD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
271	57	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Skin_tumor, Testis
53605	123	GTG ...	VQT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54273	90	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54729	87	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53414	75	TTG ...	LCK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
53649	105	GTG ...	VVG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54133	48	CTG ...	LGC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
52121	240	GTG ...	VRY ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
52367	60	TTG ...	LSK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
53967	66	TTG ...	LQL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
54741	102	GTG ...	VGI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
54565	231	CTG ...	LEE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Testis

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