Transcript 2694 | MetamORF

Transcript

ID CARD

MetamORF ID

2694

ENSMUST00000203346

Name

Col1a2-208

Strand

Biotype

retained_intron

Start-end positions

4537489-4537990

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:12843

Aliases

AA960264,
AI325291, Col1a-2, Col1a2,
Cola-2, Cola2, ENSMUSG00000029661,
MGI:88468, NCBI:12843, OFF:Col1a2,
oim

Chr 6

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3313	144	CTG ...	LVP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor, Testis
3246	114	GTG ...	VSA ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor, Testis
2900	102	GTG ...	VAM ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
2920	96	ATG ...	MTL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor, Testis
3120	135	CTG ...	LDL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor, Testis
3038	90	TTG ...	LVL ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
415370	243	AGG ...	RAD ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	C2C12
415379	180	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
2843	63	CTG ...	LTS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, C2C12, MEF, Skin_tumor
2693	126	CTG ...	LVL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor, Testis
2950	117	CTG ...	LVS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor, Testis
415220	72	ATA ...	ITR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	C2C12
3137	84	TTG ...	LKE ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor, Testis

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