Transcript 26859 | MetamORF

Transcript

ID CARD

MetamORF ID

26859

ENSMUST00000176098

Name

Wdr37-206

Strand

Biotype

nonsense_mediated_decay

Start-end positions

8819863-8849558

CDS Start-stop positions

8835421-

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:207615

Aliases

ENSMUSG00000021147,
MGI:1920393, NCBI:207615, OFF:Wdr37,
Wdr37

Chr 13

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
26858	69	TTG ...	LWS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
1136418	114	GTG ...	VGD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E, v6-5
1347269	96	GTG ...	VVT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, R1E
1137311	129	GTG ...	VVI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	R1E, v6-5
1135282	108	CTG ...	LVG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	R1E, v6-5
337265	45	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
461723	45	TTG ...	LRQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1136526	135	GTG ...	VTS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E, v6-5
1135216	189	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	R1E, v6-5
1346907	93	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
1136680	30	GTG ...	VNV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, R1E, v6-5
337488	48	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
333083	54	CTG ...	LTL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF
338028	48	TTG ...	LME ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
1850541	156	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	R1E
1137214	123	GTG ...	VFT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	Liver, R1E, v6-5
336708	63	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	v6-5
1849256	87	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
27177	72	TTG ...	LLW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Testis
334006	39	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	BMDC
1850025	90	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	R1E
337102	60	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	MEF
337636	60	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF	MEF
338702	69	CTG ...	LIK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF
941952	51	AAG ...	KDT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	BMDC
669434	42	ATG ...	MTT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	3T3

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