Transcript 26598 | MetamORF

Transcript

ID CARD

MetamORF ID

26598

ENSMUST00000076454

Name

Ubqln1-202

Strand

Biotype

protein_coding

Start-end positions

58176163-58215619

CDS Start-stop positions

58177876-58215436

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:56085

Aliases

1110046H03Rik,
1810030E05Rik, AU019746, C77538,
D13Ertd372e, Da41, Dsk2,
ENSMUSG00000005312, MGI:1860276, NCBI:56085,
OFF:Ubqln1, Plic-1, Plic1,
Ubqln1, Xdrp1

Chr 13

ORFs

52 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
341427	102	ATG ...	MGF ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC
27903	72	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Testis
341244	111	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
463346	294	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
339190	87	GTG ...	VKI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1304312	45	AAG ...	KII ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
28004	174	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Testis
1302058	39	ATC ...	IQR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
674136	60	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1304423	90	ATA ...	IGI ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
941881	48	ATA ...	IMP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
338199	33	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1305796	180	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1305837	225	AGG ...	RRC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1302816	69	AAG ...	KGA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
338971	57	CTG ...	LGA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
943404	162	ACG ...	TPR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
334465	57	CTG ...	LSQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
1303541	216	ACG ...	TAA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
1302827	51	AAG ...	KSD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1303030	117	AAG ...	KGL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
337302	129	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
336121	108	ATG ...	MHL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC
943448	60	ATG ...	MQQ ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
339781	60	GTG ...	VGS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1306016	240	ATC ...	ILE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
332809	96	CTG ...	LHL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
941664	228	ATC ...	IAH ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
335133	60	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1305054	39	ATC ...	IPL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1301845	132	ATT ...	ILE ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
26597	111	GTG ...	VSR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Overlapping sORF Upstream	Brain, E14, Testis
337060	45	ATG ...	MPY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
26692	150	CTG ...	LAW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
342109	120	CTG ...	LVA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
335546	51	CTG ...	LNS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1305501	204	AGG ...	RAC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
342544	93	ATG ...	MMD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1304642	159	CTG ...	LDR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
342202	117	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
28255	93	CTG ...	LDR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Testis
1302469	39	AGG ...	RQF ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1301746	75	ACG ...	THP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
337466	120	CTG ...	LSH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
27355	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, Testis
1304198	177	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
342171	90	ATG ...	MDL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
335486	33	TTG ...	LSR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
1302342	84	ATC ...	IRS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
28199	96	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
462768	48	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1303448	51	ATT ...	ISA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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