Transcript 26593 | MetamORF

Transcript

ID CARD

MetamORF ID

26593

ENSMUST00000184276

Name

Il6st-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

112464241-112504545

CDS Start-stop positions

112475046-112493619

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:16195

Aliases

5133400A03Rik,
AA389424, BB405851, CD130,
D13Ertd699e, ENSMUSG00000021756, gp130,
Il6st, MGI:96560, NCBI:16195,
OFF:Il6st

Chr 13

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
668629	216	GTG ...	VSA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1041339	69	CTG ...	LCQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, v6-5
336123	42	GTG ...	VGP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Downstream NMD sORF	MEF, NSC
26769	249	TTG ...	LSG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, R1E, Testis, v6-5
998805	75	GTG ...	VEA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, v6-5
27578	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	NMD sORF Upstream	BMDC, E14, MEF, NSC, v6-5
1609467	120	CTG ...	LQS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	MEF
1134734	96	GTG ...	VFR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
332409	36	ATG ...	MLY ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, MEF, NSC, v6-5
1610810	165	CTG ...	LSE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
670502	177	GTG ...	VED ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
1609010	147	TTG ...	LNP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1041355	90	GTG ...	VNE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, v6-5
335330	57	CTG ...	LPE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1347504	39	CTG ...	LGV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF
1135879	264	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, v6-5
672446	132	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1609059	51	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1135747	78	CTG ...	LGG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, v6-5
1611066	159	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	MEF, R1E
1136379	135	GTG ...	VTN ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1346810	30	TTG ...	LFC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver
671424	234	TTG ...	LCA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, v6-5
1040794	102	TTG ...	LTC ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, v6-5
1610674	129	GTG ...	VFW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1347205	69	GTG ...	VCL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF
1346903	75	GTG ...	VPV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF
338523	45	ATG ...	MGQ ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
670558	174	GTG ...	VHV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1346728	42	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF
671513	168	GTG ...	VDS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1040825	36	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Neutrophil
670750	141	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF, v6-5
1611263	51	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF
1346958	117	GTG ...	VNL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1040933	126	GTG ...	VQD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, v6-5
335285	42	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1490750	99	ATG ...	MGF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	NSC
1135622	267	GTG ...	VLK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, v6-5
1135577	234	GTG ...	VNA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, v6-5
668720	180	GTG ...	VIL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14, MEF, v6-5
1346652	123	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
336788	153	ATG ...	MDP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
671847	192	TTG ...	LDY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14, MEF, v6-5
1136186	84	ATG ...	MSV ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	MEF, NSC, v6-5
26592	219	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Downstream NMD sORF	E14, Liver, R1E, Testis
1348369	42	TTG ...	LPQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	E14, R1E
1137154	216	GTG ...	VWK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, v6-5
1136362	222	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14, MEF, v6-5
1136600	249	CTG ...	LQH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, E14, v6-5
1346575	51	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, Liver, MEF
333195	63	CTG ...	LQD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	NSC
338669	57	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Downstream NMD sORF	MEF
1609107	66	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	MEF

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