Transcript 26486 | MetamORF

Transcript

ID CARD

MetamORF ID

26486

ENSMUST00000095458

Name

Smim15-201

Strand

Biotype

protein_coding

Start-end positions

108044446-108049172

CDS Start-stop positions

108047462-108047686

CDS Relative positions

208-432

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

NCBI:75616

Aliases

2810008M24Rik,
ENSMUSG00000071180, MGI:1922866, NCBI:75616,
OFF:Smim15, Smim15

Chr 13

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1699217	36	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1609713	93	TTG ...	LKG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1301265	30	ATT ...	IRG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
26719	45	ATG ...	MYI ...	Ribo-seq	ATG	weak	19	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
27221	225	ATG ...	MLD ...	Predicted Ribo-seq	ATG	moderate	23	sORFs_org_Mouse Mackowiak2015 Johnstone2016	CDS sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
672579	63	CTG ...	LQR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
337634	30	CTG ...	LYC ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
1699220	72	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
336547	36	CTG ...	LTD ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
333303	84	CTG ...	LSM ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
339808	75	TTG ...	LWS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
670204	72	TTG ...	LKP ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
975741	39	ATA ...	IEF ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1305211	273	ATT ...	IRG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
26485	51	ATG ...	MYM ...	Ribo-seq	ATG	weak	18	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
334065	72	GTG ...	VGC ...	Ribo-seq	GTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1303126	99	ATG ...	MMP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	E14, Glioma, Liver, MEF, MESC
336523	48	ATG ...	MAS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, v6-5
1699089	81	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
333193	78	ATG ...	MLW ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, v6-5
1698930	75	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
27389	30	CTG ...	LLP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
668643	33	GTG ...	VLY ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
1608751	51	TTG ...	LEG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Downstream sORF	MEF

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