Transcript 26457 | MetamORF

Transcript

ID CARD

MetamORF ID

26457

ENSMUST00000190794

Name

Ipo11-206

Strand

Biotype

retained_intron

Start-end positions

106811783-106858047

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:76582

Aliases

1700081H05Rik,
2510001A17Rik, AI314624, AW555235,
E330021B14Rik, ENSMUSG00000042590, Ipo11,
MGI:2442377, NCBI:76582, OFF:Ipo11,
Ranbp11

Chr 13

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1301454	93	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
336129	39	TTG ...	LWN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
26456	105	GTG ...	VIE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1302362	171	GTG ...	VMS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
335922	60	GTG ...	VEA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, Spleen_B_cell
335859	45	ATG ...	MKS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1303534	39	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1303757	57	ATT ...	IRP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1304670	60	ATA ...	IPA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
333607	33	ATG ...	MRW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell
1302194	42	AAG ...	KSH ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
338196	48	TTG ...	LYV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
336603	39	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
335823	60	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1303216	129	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1136337	48	ATG ...	MSC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
337660	33	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1304369	42	ATT ...	ILW ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
338584	102	TTG ...	LMS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
333046	81	TTG ...	LCQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
337119	84	GTG ...	VGR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
336331	66	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain

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