Transcript 2645 | MetamORF

Transcript

ID CARD

MetamORF ID

2645

ENSMUST00000124686

Name

Col1a2-202

Strand

Biotype

retained_intron

Start-end positions

4535781-4536623

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:12843

Aliases

AA960264,
AI325291, Col1a-2, Col1a2,
Cola-2, Cola2, ENSMUSG00000029661,
MGI:88468, NCBI:12843, OFF:Col1a2,
oim

Chr 6

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1687833	66	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	MEF
193615	45	CTG ...	LWV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
1741507	168	CTG ...	LIK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
580788	66	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
580976	63	CTG ...	LLV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
575914	96	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
2725	51	GTG ...	VGP ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Skin_tumor
415085	60	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, C2C12, MEF
583056	72	CTG ...	LPV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
415135	111	ATC ...	IRG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	C2C12
2913	132	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Skin_tumor
582956	147	TTG ...	LIN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
2644	36	CTG ...	LLG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, Skin_tumor
200578	72	CTG ...	LQV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
577321	75	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
202838	87	TTG ...	LVR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
203014	78	CTG ...	LVL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
580383	75	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
577843	60	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
415308	45	AAG ...	KEN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	C2C12
3122	111	TTG ...	LVG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Skin_tumor
1740639	111	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
415551	96	ATT ...	IGP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
580870	33	CTG ...	LGN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
415412	105	GTG ...	VVT ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, C2C12, MEF

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