Transcript 26388 | MetamORF

Transcript

ID CARD

MetamORF ID

26388

ENSMUST00000022286

Name

Ndufs4-201

Strand

Biotype

protein_coding

Start-end positions

114287795-114388258

CDS Start-stop positions

114288763-114388056

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:17993

Aliases

6720411N02Rik,
C1-18k, ENSMUSG00000021764, MGI:1343135,
NCBI:17993, Ndufs4, OFF:Ndufs4

Chr 13

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
27662	78	GTG ...	VFQ ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
1698765	39	TTG ...	LTV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
463506	36	TTG ...	LFL ...	Ribo-seq	TTG	weak	14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
1611220	96	TTG ...	LEQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
943872	72	AGG ...	RRC ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
944201	174	AAG ...	KKM ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
28085	39	CTG ...	LPF ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Spleen_B_cell, Testis, v6-5
462807	30	CTG ...	LLA ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell
943169	30	ATA ...	IPE ...	Ribo-seq	ATA	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
27535	132	ATG ...	MMW ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
27231	129	ATG ...	MWK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
1304791	177	ATG ...	MGK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
27308	84	GTG ...	VQT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF, R1E, Spleen_B_cell, Testis
26656	81	CTG ...	LVF ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis
27707	87	ATG ...	MVQ ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell, Testis
943758	39	AAG ...	KKM ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
26600	45	GTG ...	VPK ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
27647	33	ATG ...	MQL ...	Ribo-seq	ATG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
26811	51	TTG ...	LEA ...	Ribo-seq	TTG	moderate	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
28242	198	ATG ...	MGI ...	Ribo-seq	ATG		4	sORFs_org_Mouse	CDS sORF	3T3, Brain, Liver, Testis
942238	288	AGG ...	RRC ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
28257	180	GTG ...	VPK ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
1609829	30	CTG ...	LAT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1608568	36	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative Downstream sORF	MEF
26387	33	TTG ...	LIP ...	Ribo-seq	TTG	moderate	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
27768	45	TTG ...	LPT ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell, Testis, v6-5
27954	168	ATG ...	MQL ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis, v6-5

Export data