Transcript 262526

Transcript

ID CARD

MetamORF ID

262526

ENSMUST00000039788

Name

Cd276-201

Strand

Biotype

protein_coding

Start-end positions

58524300-58540941

CDS Start-stop positions

58526339-58540745

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:102657

Aliases

6030411F23Rik,
AU016588, B7h3, B7RP-2,
Cd276, ENSMUSG00000035914, MGI:2183926,
NCBI:102657, OFF:Cd276

Chr 9

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
625705	57	GTG ...	VPR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1271094	105	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
623314	45	TTG ...	LSG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
272806	36	ATG ...	MEK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1273331	249	AAG ...	KLI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
625634	63	ATG ...	MQV ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
625136	39	ATG ...	MLT ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
262525	42	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
621766	258	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1750157	108	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1275112	51	AGG ...	RTR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
616341	273	GTG ...	VTW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
272034	267	ATG ...	MVS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	R1E
6846	120	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	CDS sORF	MEF, R1E
621715	195	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1270868	60	ATG ...	MLT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
622865	75	ATG ...	MPP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
417506	180	TTG ...	LEE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1271484	72	ATG ...	MGW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
272388	42	ATG ...	MEM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1268657	84	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF

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