Transcript 26194 | MetamORF

Transcript

ID CARD

MetamORF ID

26194

ENSMUST00000154956

Name

Fh1-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

175614776-175625573

CDS Start-stop positions

175622614-175625573

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:14194

Aliases

ENSMUSG00000026526,
Fh, Fh-1, Fh1,
MGI:95530, NCBI:14194, OFF:Fh1

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1050537	36	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
992016	63	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
347083	33	ATG ...	MVS ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
39680	63	CTG ...	LQC ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Brain, Liver, Testis
26193	66	GTG ...	VLQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Brain, Liver, Testis
950089	60	AAG ...	KIG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
918707	249	GTG ...	VSG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
643134	54	TTG ...	LSL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Liver
888323	45	CTG ...	LIN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
722023	120	TTG ...	LKV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, Liver
979100	66	ATG ...	MMS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
365417	57	ATG ...	MIT ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
846824	129	TTG ...	LKR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, Liver
434212	54	CTG ...	LGK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, Liver
348862	30	TTG ...	LEV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Downstream NMD sORF	3T3, Liver

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