Transcript 258178

Transcript

ID CARD

MetamORF ID

258178

ENSMUST00000214359

Name

Ldlr-203

Strand

Biotype

retained_intron

Start-end positions

21723641-21738532

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:16835

Aliases

ENSMUSG00000032193,
Hlb301, Ldlr, MGI:96765,
NCBI:16835, OFF:Ldlr

Chr 9

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6153	39	GTG ...	VRL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
618291	39	CTG ...	LFP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
258177	126	CTG ...	LEF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil, v6-5
434689	33	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
437853	60	GTG ...	VHQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
436367	66	GTG ...	VQM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
6099	42	CTG ...	LQG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
267297	63	CTG ...	LQL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
618052	84	TTG ...	LWP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
760764	99	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1329585	30	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1330008	99	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
417222	45	ATT ...	ISG ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
616622	33	TTG ...	LGL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
436813	39	GTG ...	VRW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
760071	96	GTG ...	VCD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
1270236	276	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
266451	138	TTG ...	LDN ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
1330453	48	GTG ...	VAT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
434036	54	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
438851	45	GTG ...	VGV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
438808	33	GTG ...	VFA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
265547	33	GTG ...	VIR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil, v6-5
435548	87	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1328859	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
434302	54	CTG ...	LSV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
762112	45	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
438584	78	ATG ...	MNS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
436345	81	CTG ...	LMN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
438215	75	GTG ...	VSQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
434131	87	GTG ...	VRL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
434044	60	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
5903	30	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
434075	132	TTG ...	LQP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
437344	72	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
255718	48	ATG ...	MHP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
438318	42	GTG ...	VSQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
6117	60	GTG ...	VFG ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
437284	30	TTG ...	LCV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
437794	30	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
619364	48	GTG ...	VPV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
761156	105	TTG ...	LDK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil

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