Transcript 255802

Transcript

ID CARD

MetamORF ID

255802

ENSMUST00000216624

Name

Rexo2-209

Strand

Biotype

retained_intron

Start-end positions

48474183-48480606

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:104444

Aliases

1810038D15Rik,
AW107347, ENSMUSG00000032026, MGI:1888981,
NCBI:104444, OFF:Rexo2, Rex2,
Rexo2, Sfn, Smfn

Chr 9

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
436526	99	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
255801	93	TTG ...	LDI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF
260269	54	CTG ...	LIT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	Brain, Liver, MEF, Neutrophil
268095	138	CTG ...	LII ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
435733	117	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
266269	111	CTG ...	LDS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
264926	114	TTG ...	LLD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
263952	33	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
435224	108	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1692668	45	ATG ...	MLV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
268410	39	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
261390	36	TTG ...	LRR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
84301	78	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, MEF

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