Transcript 2536 | MetamORF

Transcript

ID CARD

MetamORF ID

2536

ENSMUST00000136312

Name

Ubc-202

Strand

Biotype

protein_coding

Start-end positions

125385965-125390014

CDS Start-stop positions

125386057-125388261

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:22190

Aliases

2700054O04Rik,
AI194771, ENSMUSG00000008348, MGI:98889,
NCBI:22190, OFF:Ubc, Rps27a,
TI-225, Uba52, Ubb,
Ubc

Chr 5

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2535	87	GTG ...	VET ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
187902	60	GTG ...	VRT ...	Ribo-seq	GTG		17	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
186077	33	CTG ...	LLC ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
190123	30	CTG ...	LCE ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, Liver, MEF, Neutrophil, NSC, Spleen_B_cell
831133	48	GTG ...	VPQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Liver
65426	129	GTG ...	VLP ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Neutrophil, Spleen_B_cell, Testis
414671	33	CTG ...	LCE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, Liver, Spleen_B_cell
904873	39	TTG ...	LCL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, Liver
414733	105	AGG ...	RKT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	C2C12
520671	36	CTG ...	LLC ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, Liver, Neutrophil, Spleen_B_cell
985786	54	GTG ...	VLV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver
903690	33	TTG ...	LFL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain

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