Transcript 2531 | MetamORF

Transcript

ID CARD

MetamORF ID

2531

ENSMUST00000156859

Name

Hadha-205

Strand

Biotype

protein_coding

Start-end positions

30118304-30155162

CDS Start-stop positions

30119815-30154948

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:97212

Aliases

C77020,
ENSMUSG00000025745, Hadha, MGI:2135593,
Mtpa, NCBI:97212, OFF:Hadha,
TP-alpha

Chr 5

ORFs

75 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
985380	30	CTG ...	LKW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, R1E
905564	36	AGG ...	RKE ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
872325	45	CTG ...	LHL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, NSC
64236	69	TTG ...	LPA ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC, R1E, Spleen_B_cell
573065	72	CTG ...	LLS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver
572625	69	TTG ...	LSC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, NSC
829309	54	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, NSC
186171	78	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil
872147	42	TTG ...	LSD ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
64318	51	CTG ...	LDL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
1241132	84	AAG ...	KCC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
872634	45	CTG ...	LWV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
524303	69	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, Spleen_B_cell
519292	30	TTG ...	LPR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
906058	66	ATA ...	ILI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1241297	141	ACG ...	TRQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
190179	54	CTG ...	LLS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, NSC
524190	90	TTG ...	LAV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, NSC, Spleen_B_cell
187966	78	TTG ...	LQL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E
1242153	72	AGG ...	RLD ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
190995	33	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, NSC
170933	54	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, NSC
190621	81	CTG ...	LAG ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
190196	66	TTG ...	LPK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF
524385	69	CTG ...	LDL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
523663	36	CTG ...	LQS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Spleen_B_cell
872777	39	GTG ...	VLP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC
570776	30	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, NSC
524365	48	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, Spleen_B_cell
66156	33	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell, v6-5
524292	33	TTG ...	LEH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
523981	93	GTG ...	VSL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
66950	75	TTG ...	LKS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Testis, v6-5
189268	72	TTG ...	LGL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil
872402	93	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
176078	33	TTG ...	LLL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, NSC
517869	54	ATG ...	MPI ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
1660692	51	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
833685	93	CTG ...	LPW ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, R1E
524608	51	CTG ...	LIG ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Neutrophil, Spleen_B_cell
183210	30	TTG ...	LRL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, v6-5
188939	123	CTG ...	LTK ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, Neutrophil, R1E, Spleen_B_cell
524000	66	GTG ...	VQT ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, R1E, Spleen_B_cell
872100	36	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, v6-5
187410	42	ATG ...	MWQ ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
1242603	120	AGG ...	RKG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
520162	36	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
519492	51	CTG ...	LSH ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Spleen_B_cell
186142	69	TTG ...	LPA ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, NSC, Spleen_B_cell
65518	84	CTG ...	LTK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, NSC, R1E
169830	30	TTG ...	LWI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, v6-5
872412	30	TTG ...	LKG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
524637	36	TTG ...	LTS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver, Spleen_B_cell
2530	39	GTG ...	VDP ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Liver, MEF, Skin_tumor
173127	57	ATG ...	MWQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
523607	63	TTG ...	LSK ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
181659	57	TTG ...	LYN ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF, NSC, v6-5
184002	45	TTG ...	LGS ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Spleen_B_cell, v6-5
521168	69	GTG ...	VSL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, Spleen_B_cell
571436	177	GTG ...	VFF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
169898	72	ATG ...	MAS ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, v6-5
570705	51	GTG ...	VTL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, v6-5
67046	57	CTG ...	LKS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Testis, v6-5
188497	66	TTG ...	LAF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Neutrophil, Spleen_B_cell
66233	69	CTG ...	LYL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
524773	87	CTG ...	LKC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
524024	54	TTG ...	LWP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell, v6-5
63810	45	TTG ...	LSK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Spleen_B_cell, v6-5
574100	84	TTG ...	LRN ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, NSC, v6-5
516699	63	CTG ...	LKC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, Spleen_B_cell
181941	39	TTG ...	LPQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, NSC
872491	90	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
178657	30	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, NSC
179893	72	CTG ...	LGQ ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver, MEF, NSC
188551	57	ATG ...	MAS ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5

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