Transcript 245461

Transcript

ID CARD

MetamORF ID

245461

ENSMUST00000168741

Name

Glg1-203

Strand

Biotype

protein_coding

Start-end positions

111157525-111177776

CDS Start-stop positions

111157894-

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:20340

Aliases

AI593353,
AW537898, CFR, CFR-1,
ENSMUSG00000003316, ESL-1, Glg1,
MG-160, MG160, MGI:104967,
NCBI:20340, OFF:Glg1, Selel

Chr 8

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
758216	120	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
612451	69	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
81150	78	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	BMDC
253149	69	TTG ...	LRC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
607377	36	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
236929	75	ATG ...	MKP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
430784	51	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
83012	180	ATG ...	MLT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell
82881	153	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell
604216	54	GTG ...	VLK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
82949	45	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Spleen_B_cell
607779	30	TTG ...	LRC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
428317	57	CTG ...	LLW ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	BMDC, Brain
917349	48	ATT ...	ITA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
82953	177	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell
918922	102	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
1569790	201	ATG ...	MLI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
80835	90	GTG ...	VRT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
612235	39	ATG ...	MTG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, BMDC
606839	51	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	3T3
615089	96	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
253458	78	ATG ...	MTG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, NSC
918463	81	ATC ...	ICM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
1569659	198	CTG ...	LIW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
615329	78	ATG ...	MKP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	3T3
604005	60	GTG ...	VTS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	3T3, BMDC
613968	129	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
430151	93	CTG ...	LCA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
433124	90	CTG ...	LCA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	3T3, BMDC, Spleen_B_cell
5612	90	CTG ...	LHT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Brain

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