Transcript 24344 | MetamORF

Transcript

ID CARD

MetamORF ID

24344

ENSMUST00000110082

Name

Calm1-202

Strand

Biotype

protein_coding

Start-end positions

100199435-100209814

CDS Start-stop positions

100199714-100206428

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:12313

Aliases

AI256814,
AI327027, AI461935, AL024000,
Calm, Calm1, CaM,
Cam1, ENSMUSG00000001175, MGI:88251,
NCBI:12313, OFF:Calm1

Chr 12

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
939803	63	ACG ...	TAV ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
26168	63	GTG ...	VQP ...	Ribo-seq	GTG		21	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
325517	39	ATG ...	MVT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
323023	36	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
325285	57	ATG ...	MIN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
24632	108	CTG ...	LRW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Testis
24884	54	GTG ...	VLG ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, Testis
326114	87	TTG ...	LAT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
1604361	36	TTG ...	LMC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
419936	114	AAG ...	KLS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
326322	90	CTG ...	LRH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
25511	84	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, Testis
9815	66	ATG ...	MAT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
419932	66	AGG ...	RNW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
9763	87	GTG ...	VTA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Testis
24425	51	CTG ...	LGV ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, Testis
324354	33	CTG ...	LSN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
326985	30	GTG ...	VTP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
9641	45	ATG ...	MGM ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Testis
940543	81	AAG ...	KRS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
25121	54	GTG ...	VQP ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
327512	57	CTG ...	LQN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
325103	42	ATG ...	MNF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
324839	36	ATG ...	MGP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
25307	57	GTG ...	VVL ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF, Neutrophil, NSC, R1E, Testis
1698147	33	TTG ...	LDC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
9759	39	ATG ...	MVT ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Testis
324005	87	CTG ...	LFV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
26047	66	CTG ...	LVQ ...	Ribo-seq	CTG		21	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
322417	63	TTG ...	LLM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
25101	54	GTG ...	VPL ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, Neutrophil, NSC, Testis, v6-5
779683	153	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
25438	30	ATG ...	MAP ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Testis
1606479	54	ATG ...	MFP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
25630	57	GTG ...	VVP ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, Neutrophil, NSC, Testis, v6-5
1606523	33	ATG ...	MCR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
9851	69	TTG ...	LMA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Testis
1605440	30	GTG ...	VNH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
326973	36	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
420261	93	AAG ...	KMV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12
323270	33	ATG ...	MID ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
940628	90	ATA ...	IAK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
325071	36	ATG ...	MKT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	Brain
25929	57	CTG ...	LVQ ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1698202	69	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
9734	90	ATG ...	MVT ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Neutrophil, Testis
25701	63	GTG ...	VSV ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5

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