Transcript 24319 | MetamORF

Transcript

ID CARD

MetamORF ID

24319

ENSMUST00000021479

Name

Actr10-201

Strand

Biotype

protein_coding

Start-end positions

70937857-70964718

CDS Start-stop positions

70937955-70962048

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:56444

Aliases

Actr10,
Actr11, Arp11, ENSMUSG00000021076,
MGI:1891654, NCBI:56444, OFF:Actr10

Chr 12

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
324015	39	CTG ...	LTG ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell
324356	42	ATG ...	MER ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
324285	111	TTG ...	LEH ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, R1E, Spleen_B_cell, v6-5
328967	186	GTG ...	VDC ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E
25832	39	GTG ...	VLS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E, Testis, v6-5
327601	117	CTG ...	LFL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Spleen_B_cell, v6-5
1298228	42	ACG ...	TRA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
940250	39	AAG ...	KLI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
330030	99	ATG ...	MER ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
666625	54	GTG ...	VDI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
329899	114	TTG ...	LTI ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
25208	42	CTG ...	LVL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E, Testis, v6-5
322497	39	TTG ...	LNK ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, v6-5
1131376	30	TTG ...	LMW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, v6-5
26017	57	GTG ...	VFF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, Testis, v6-5
324546	57	TTG ...	LTI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
324668	36	GTG ...	VDS ...	Ribo-seq	GTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
324145	90	TTG ...	LGA ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell
24922	45	TTG ...	LFS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, Testis
329137	81	TTG ...	LLG ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
321148	183	GTG ...	VPN ...	Ribo-seq	GTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
324137	54	GTG ...	VDC ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC
24639	45	CTG ...	LQK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Testis
24318	45	CTG ...	LLT ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
323654	60	ATG ...	MLT ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
26270	39	TTG ...	LRF ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, R1E, Testis, v6-5
331103	117	ATG ...	MLT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
461029	84	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
25400	42	TTG ...	LTL ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
24558	54	TTG ...	LWK ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, MEF, R1E, Testis
940411	36	ATA ...	IIS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
25824	78	TTG ...	LAP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Testis
940916	108	ATC ...	IHW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
459052	33	TTG ...	LGA ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, Spleen_B_cell, v6-5
25660	36	CTG ...	LVQ ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
1299418	99	AAG ...	KTF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
327384	63	GTG ...	VAH ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
322007	45	ATG ...	MSF ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, v6-5
1605825	30	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
327548	51	TTG ...	LWL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
330107	78	CTG ...	LGS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
24852	33	GTG ...	VQL ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
25786	45	GTG ...	VWI ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
939574	51	ATC ...	IHW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

Export data