Transcript 241657

Transcript

ID CARD

MetamORF ID

241657

ENSMUST00000153079

Name

Atp6v1b2-205

Strand

Biotype

retained_intron

Start-end positions

69088768-69107363

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:11966

Aliases

AI194269,
AI790362, Atp6b2, Atp6v1b2,
ENSMUSG00000006273, HO57, MGI:109618,
NCBI:11966, OFF:Atp6v1b2, R74844

Chr 8

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
241656	42	GTG ...	VKK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, NSC, v6-5
1261455	141	ACG ...	TAE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
238014	33	ATG ...	MAQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, v6-5
754694	45	GTG ...	VLL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Neutrophil, NSC, R1E
1263052	63	ACG ...	TAL ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
607995	30	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, v6-5
237502	42	CTG ...	LVG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, v6-5
428580	57	GTG ...	VNG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, NSC, R1E, v6-5
79283	153	CTG ...	LAL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Neutrophil, NSC, R1E
248287	93	ATG ...	MNV ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E, v6-5
1264054	72	AAG ...	KTV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
756136	135	ATG ...	MCR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	BMDC, NSC
919189	45	ATA ...	IVK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
244023	60	CTG ...	LPG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, v6-5
243754	87	GTG ...	VPV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E, v6-5
1029187	81	GTG ...	VDY ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, Neutrophil
429113	96	TTG ...	LTL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, NSC, R1E, v6-5
1262160	111	AAG ...	KHV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1263024	165	ATC ...	ITP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1262647	210	ATC ...	INP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
81793	147	CTG ...	LTT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Neutrophil, NSC
756526	129	CTG ...	LAY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, Neutrophil, NSC
1262142	72	AAG ...	KVE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1261206	39	ATC ...	ILD ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1071398	30	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil, v6-5
607877	30	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, v6-5
248049	60	TTG ...	LLG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, NSC
5657	42	TTG ...	LKK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, R1E, v6-5
244810	33	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
245530	36	TTG ...	LQL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil, NSC, v6-5
427590	39	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Neutrophil, NSC, R1E, v6-5
611189	105	TTG ...	LEY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
1327413	90	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, NSC, R1E
5627	51	CTG ...	LSP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, NSC, v6-5
238001	42	GTG ...	VGR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
5541	48	CTG ...	LTL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
754784	105	TTG ...	LVK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, Neutrophil, NSC, v6-5
755730	42	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Neutrophil, NSC
249529	72	GTG ...	VSD ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, NSC, v6-5
1263152	138	ATC ...	IYE ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
431265	30	TTG ...	LQP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E

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