Transcript 24088 | MetamORF

Transcript

ID CARD

MetamORF ID

24088

ENSMUST00000149371

Name

Xpo1-206

Strand

Biotype

processed_transcript

Start-end positions

23256058-23282726

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:103573

Aliases

AA420417,
Crm1, ENSMUSG00000020290, Exp1,
MGI:2144013, NCBI:103573, OFF:Xpo1,
Xpo1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1483309	39	ATG ...	MRN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1393002	90	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
1396613	69	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
651391	48	CTG ...	LEV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
1528198	99	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
301812	159	CTG ...	LKW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
446204	54	ATG ...	MQL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
24087	276	GTG ...	VNC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
452809	36	TTG ...	LIS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
24238	279	GTG ...	VVN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, Testis
1528796	105	ATG ...	MFV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
645077	30	GTG ...	VED ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
453837	33	TTG ...	LIF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver
641902	105	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
650842	45	TTG ...	LLV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
649891	54	CTG ...	LQQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
299032	144	CTG ...	LKF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
297252	75	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
647243	45	GTG ...	VVN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Liver

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