Transcript 239227

Transcript

ID CARD

MetamORF ID

239227

ENSMUST00000212613

Name

Sf3b3-204

Strand

Biotype

retained_intron

Start-end positions

110840568-110845057

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:101943

Aliases

1810061H24Rik,
5730409A01Rik, AA409318, D8Ertd633e,
ENSMUSG00000033732, MGI:1289341, mKIAA0017,
NCBI:101943, OFF:Sf3b3, RSE1,
SAP130, SF3b130, Sf3b3

Chr 8

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
431318	72	ATG ...	MIQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
249892	30	CTG ...	LWI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
427230	48	CTG ...	LLK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
430461	69	TTG ...	LRK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
249332	36	TTG ...	LVL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
431440	120	TTG ...	LFP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
430469	72	CTG ...	LAK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
239226	30	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
431334	99	GTG ...	VAL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
919789	72	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
416847	81	CTG ...	LYN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1568773	63	GTG ...	VDP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
430317	33	GTG ...	VLS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
431436	123	TTG ...	LLF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
427737	45	TTG ...	LAK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Spleen_B_cell
431855	105	TTG ...	LLS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
78401	162	TTG ...	LEY ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
431427	111	GTG ...	VGR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
431794	45	TTG ...	LKY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
428300	93	CTG ...	LSY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
430243	126	TTG ...	LAV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
428615	66	ATG ...	MSP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
431393	120	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

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