Transcript 236027

Transcript

ID CARD

MetamORF ID

236027

ENSMUST00000210929

Name

Acsl1-209

Strand

Biotype

processed_transcript

Start-end positions

46471183-46534684

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:14081

Aliases

Acas,
Acas1, Acs, Acsl1,
ENSMUSG00000018796, Facl2, FACS,
LACS 1, LACS1, MGI:102797,
NCBI:14081, OFF:Acsl1

Chr 8

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
238237	144	CTG ...	LCH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
238500	234	TTG ...	LFR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
236026	99	CTG ...	LLM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1029379	39	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
989147	48	CTG ...	LID ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver
246931	78	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
239983	57	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
248823	63	ATG ...	MPE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
248170	33	CTG ...	LIQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1444860	63	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
246305	45	ATG ...	MKA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1446233	45	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
243160	87	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
246960	66	CTG ...	LDD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
245035	198	GTG ...	VIF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
252065	75	TTG ...	LFR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil
238967	30	CTG ...	LKP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
240360	54	GTG ...	VVP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
244399	78	CTG ...	LKA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
241898	54	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
250288	144	TTG ...	LTF ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, R1E, v6-5
248638	36	GTG ...	VLI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
239014	42	CTG ...	LHR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
1030219	42	CTG ...	LLN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
240240	69	ATG ...	MIF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
243005	54	TTG ...	LKL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
758657	72	GTG ...	VEQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
1825723	126	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
237201	90	CTG ...	LTP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E

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