Transcript 2344 | MetamORF

Transcript

ID CARD

MetamORF ID

2344

ENSMUST00000137040

Name

Sorcs2-204

Strand

Biotype

retained_intron

Start-end positions

36061081-36398107

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:81840

Aliases

ENSMUSG00000029093,
MGI:1932289, mKIAA1329, N28137,
NCBI:81840, OFF:Sorcs2, Sorcs2

Chr 5

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
185386	66	CTG ...	LPC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
169731	117	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
175688	60	CTG ...	LTK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
182758	78	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
184270	300	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
177141	90	GTG ...	VEM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
175208	144	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
173357	81	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
173802	39	CTG ...	LQE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
175878	60	CTG ...	LGK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
171339	180	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
171305	72	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
184344	78	CTG ...	LYV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
183544	33	ATG ...	MSP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
2343	30	CTG ...	LDR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
183096	51	ATG ...	MCH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
168231	66	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
174517	183	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
170517	84	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain

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