Transcript 2327 | MetamORF

Transcript

ID CARD

MetamORF ID

2327

ENSMUST00000202262

Name

Cct6a-205

Strand

Biotype

retained_intron

Start-end positions

129793181-129794500

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:12466

Aliases

CCT-zeta,
CCT-zeta-1, Cct6, Cct6a,
Cctz-1, ENSMUSG00000029447, MGI:107943,
NCBI:12466, OFF:Cct6a, TCP-1-zeta

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
62931	90	TTG ...	LGH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
65042	105	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
63462	51	CTG ...	LLQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
61594	243	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62195	30	TTG ...	LWW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
65258	87	GTG ...	VRR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
63024	48	CTG ...	LTV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
1088143	114	TTG ...	LTV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
64338	33	ATG ...	MQS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E, Testis
65914	201	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
62053	207	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
1087752	120	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
62226	123	CTG ...	LNS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
62487	231	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
2303	168	GTG ...	VFH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
65512	42	CTG ...	LSL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
66261	48	TTG ...	LQA ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
2370	150	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis
64202	216	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
2326	30	CTG ...	LFG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Liver, MEF, R1E, Skin_tumor
65589	219	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
64087	192	ATG ...	MAY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
64060	66	TTG ...	LRS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Testis

Export data