Transcript 227 | MetamORF

Transcript

ID CARD

MetamORF ID

227

ENSMUST00000029256

Name

Sec62-201

Strand

Biotype

protein_coding

Start-end positions

30792875-30821263

CDS Start-stop positions

30793348-30818966

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:69276

Aliases

3100002M17Rik,
AI844545, AW545092, Dtrp1,
ENSMUSG00000027706, HTP1, MGI:1916526,
NCBI:69276, OFF:Sec62, Sec62,
Tloc1

Chr 3

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54534	63	GTG ...	VTG ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, NSC, Spleen_B_cell, Testis, v6-5
135943	33	ATG ...	MIK ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, v6-5
129538	39	CTG ...	LFC ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
1219142	42	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1224110	246	AAG ...	KMI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
130741	42	CTG ...	LSN ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
1220658	213	AGG ...	RMR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1219299	72	AGG ...	RER ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
143143	168	CTG ...	LAS ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
129052	36	ATG ...	MMI ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, v6-5
138596	90	CTG ...	LAS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
143805	87	ATG ...	MMI ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
136972	96	GTG ...	VGQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, NSC, v6-5
1218446	135	AGG ...	RKG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
16966	57	CTG ...	LAD ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
54036	51	CTG ...	LTC ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Brain, E14, Spleen_B_cell, Testis, v6-5
52358	72	CTG ...	LTW ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis
1218970	66	AGG ...	RSS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
541293	255	GTG ...	VGK ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
53252	57	TTG ...	LTP ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
132846	39	ATG ...	MTQ ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
226	30	ATG ...	MST ...	Ribo-seq	ATG	weak	15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell
54084	138	ATG ...	MRK ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, NSC, Testis, v6-5
54603	210	ATG ...	MRN ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, Testis
133132	96	ATG ...	MGI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, v6-5
821496	288	CTG ...	LTH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
52815	153	GTG ...	VRK ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell, Testis, v6-5
54349	108	ATG ...	MDQ ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, Testis, v6-5
52630	171	GTG ...	VRK ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Testis, v6-5
141979	219	GTG ...	VLK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC
54567	75	CTG ...	LLT ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis
1221328	45	CTG ...	LHM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, NSC
55132	66	CTG ...	LQQ ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Testis
539163	45	TTG ...	LSH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, v6-5
129629	33	TTG ...	LVN ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1219891	102	AAG ...	KMI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
16794	39	CTG ...	LEE ...	Ribo-seq	CTG	moderate	17	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
543279	243	ATG ...	MIK ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, NSC
1223133	39	AGG ...	RLG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
137792	30	GTG ...	VNH ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
144998	129	GTG ...	VGQ ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, v6-5
132300	51	TTG ...	LCG ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, Spleen_B_cell, v6-5
128446	30	ATG ...	MVK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC
135972	84	ATG ...	MRR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, MEF, v6-5
55525	117	CTG ...	LFC ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
132397	87	GTG ...	VMR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, MEF, v6-5
53270	201	CTG ...	LKP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, Spleen_B_cell, Testis
1506406	63	ATG ...	MER ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Downstream Overlapping sORF	MEF, NSC
542387	147	GTG ...	VPL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, v6-5
141912	30	CTG ...	LWS ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
142386	84	ATG ...	MIK ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
127727	39	GTG ...	VFI ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, v6-5
749368	111	GTG ...	VGK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF
1174144	39	CTG ...	LWS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1222786	168	AGG ...	RKS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
16650	78	CTG ...	LHP ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
1223153	48	ACG ...	TTA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
750861	99	ATG ...	MIK ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF
131840	114	GTG ...	VPL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
142255	174	ATG ...	MVK ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E
131598	75	ATG ...	MTT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Downstream Overlapping sORF	B_cell, MEF, NSC, v6-5
543211	96	TTG ...	LSH ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, v6-5
134218	75	GTG ...	VLK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver

Export data