Transcript 2268 | MetamORF

Transcript

ID CARD

MetamORF ID

2268

ENSMUST00000031311

Name

Dck-201

Strand

Biotype

protein_coding

Start-end positions

88764996-88783281

CDS Start-stop positions

88765256-88781246

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:13178

Aliases

Dck,
ENSMUSG00000029366, MGI:102726, NCBI:13178,
OFF:Dck

Chr 5

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
906311	75	ATT ...	IGK ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
169846	30	ATG ...	MKA ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
1685869	51	TTG ...	LTI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	MEF
1559661	81	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
567635	51	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC
2267	42	CTG ...	LAR ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell
524177	54	CTG ...	LWP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Neutrophil, Spleen_B_cell
905811	45	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
904936	90	ATT ...	IIC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
567491	33	ATG ...	MKN ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E
171789	45	ATG ...	MKQ ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell
176883	30	TTG ...	LAK ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, v6-5
186391	36	CTG ...	LAP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
517803	63	CTG ...	LNG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell
523325	81	CTG ...	LRI ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, R1E, Spleen_B_cell
902350	108	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
570414	57	ATG ...	MLM ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, NSC
1234762	72	CTG ...	LPF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
516861	36	GTG ...	VVQ ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Spleen_B_cell
522683	48	GTG ...	VPP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Spleen_B_cell
187231	78	CTG ...	LYY ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
522570	72	ATG ...	MRN ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
904914	153	AGG ...	RGP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1559681	108	GTG ...	VVF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
186210	57	ATG ...	MKT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, NSC, R1E
905813	87	AAG ...	KPL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1467466	33	ATG ...	MPV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, R1E
904578	207	AGG ...	RAR ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
2350	60	GTG ...	VDH ...	Ribo-seq	GTG	strong	12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
186249	66	TTG ...	LKD ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, v6-5
521565	93	TTG ...	LII ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell
522362	36	ATG ...	MLK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell
523715	114	CTG ...	LPF ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
905278	39	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1090765	90	ATG ...	MQR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
62643	30	ATG ...	MQI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	sORF Upstream	BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell, Testis
187393	48	GTG ...	VTG ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
187120	57	CTG ...	LCI ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
188870	99	TTG ...	LII ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
905975	96	ATT ...	IIC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
567884	33	CTG ...	LDE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E
830047	33	GTG ...	VQR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
521460	66	TTG ...	LGS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
906224	105	ATG ...	MAS ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC
188432	63	ATG ...	MLM ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell
905583	51	ATA ...	IVT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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