Transcript 217907

Transcript

ID CARD

MetamORF ID

217907

ENSMUST00000207980

Name

Eed-205

Strand

Biotype

protein_coding

Start-end positions

89954660-89964841

CDS Start-stop positions

89955537-

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:13626

Aliases

Eed,
ENSMUSG00000030619, l(7)5Rn, l7Rn5,
lusk, MGI:95286, NCBI:13626,
OFF:Eed

Chr 7

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1744666	45	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
1318852	51	GTG ...	VVW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	E14, MEF
217906	117	CTG ...	LTH ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
595314	45	TTG ...	LHW ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	sORF	B_cell, MEF, v6-5
1098818	42	ATG ...	MVR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	E14, v6-5
222279	48	CTG ...	LYV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF, Spleen_B_cell, v6-5
426765	114	ATG ...	MII ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Spleen_B_cell
535157	54	GTG ...	VAR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	sORF	3T3, Brain, Spleen_B_cell, v6-5
531765	57	CTG ...	LTF ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell, v6-5
224400	69	TTG ...	LGN ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF	B_cell, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
425977	132	ATG ...	MQL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Spleen_B_cell, v6-5
1070682	270	CTG ...	LGF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	E14, Neutrophil, v6-5
591059	39	TTG ...	LYA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	MEF
1101430	36	ATG ...	MWR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	E14, v6-5
424397	51	TTG ...	LCA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	Spleen_B_cell, v6-5
230741	171	CTG ...	LYV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, Liver, MEF, Spleen_B_cell, v6-5
4482	39	GTG ...	VEN ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	B_cell, MEF
1743483	51	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	MEF
424881	261	CTG ...	LEY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	B_cell, E14, Neutrophil, Spleen_B_cell, v6-5
231590	225	ATG ...	MFP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, Neutrophil, Spleen_B_cell, v6-5
233460	192	TTG ...	LGN ...	Ribo-seq	TTG		9	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
532546	30	ATG ...	MLE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	MEF, v6-5

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