Transcript 212238

Transcript

ID CARD

MetamORF ID

212238

ENSMUST00000207601

Name

Spint2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

29256323-29281912

CDS Start-stop positions

29260080-29281617

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:20733

Aliases

AL024025,
C76321, ENSMUSG00000074227, HAI-2,
MGI:1338031, NCBI:20733, OFF:Spint2,
Spint2

Chr 7

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
74064	108	GTG ...	VGF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain
216404	159	CTG ...	LVG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
72874	48	CTG ...	LMT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
220455	150	CTG ...	LFL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
4338	51	GTG ...	VRC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
217466	165	GTG ...	VIL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
229113	93	GTG ...	VVR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
213318	78	CTG ...	LAR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD Overlapping sORF Upstream	Brain
3751	75	GTG ...	VWF ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
76616	45	ATG ...	MTW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
217242	135	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
76390	129	CTG ...	LQC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain
228580	156	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
229178	66	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain

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