Transcript 207 | MetamORF

Transcript

ID CARD

MetamORF ID

207

ENSMUST00000107682

Name

Tmem154-201

Strand

Biotype

protein_coding

Start-end positions

84666192-84704575

CDS Start-stop positions

84666352-84701939

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:320782

Aliases

9930117H01Rik,
ENSMUSG00000056498, MGI:2444725, NCBI:320782,
OFF:Tmem154, Tmem154

Chr 3

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
972628	87	ACG ...	TRS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1058239	60	CTG ...	LCC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Neutrophil
1463840	57	CTG ...	LCC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
491	36	ATG ...	MDE ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
894333	87	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
206	90	ATG ...	MTR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC, Skin_tumor, Spleen_B_cell
1463678	33	TTG ...	LKR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
894668	48	AGG ...	REA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
504935	42	ATG ...	MCA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	BMDC, Glioma, Liver, MEF, MESC
508613	51	GTG ...	VFT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, Spleen_B_cell
1057010	33	TTG ...	LEG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
892749	54	GTG ...	VPC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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