Transcript 20510 | MetamORF

Transcript

ID CARD

MetamORF ID

20510

ENSMUST00000093389

Name

Morc2a-201

Strand

Biotype

protein_coding

Start-end positions

3649494-3690370

CDS Start-stop positions

3650380-3689103

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:74522

Aliases

8430403M08Rik,
ENSMUSG00000034543, MGI:1921772, Morc2a,
NCBI:74522, OFF:Morc2a, Zcwcc1

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1126888	69	GTG ...	VVH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
658209	57	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
656143	99	TTG ...	LNI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
647320	90	CTG ...	LQA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF, R1E
644472	63	TTG ...	LGS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
659192	48	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1124745	30	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
639881	108	TTG ...	LGK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
653528	57	CTG ...	LEC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
649124	39	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
314996	69	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1124120	132	ATG ...	MRW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
657196	54	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
646346	123	GTG ...	VFG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1600449	30	GTG ...	VRQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1291892	54	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
656678	66	ATG ...	MCP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
655918	45	CTG ...	LNW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1127382	30	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
654078	66	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
643362	69	CTG ...	LLE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
20509	42	CTG ...	LFS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, Testis
660094	72	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
304236	96	ATG ...	MYF ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell

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