Transcript 20084 | MetamORF

Transcript

ID CARD

MetamORF ID

20084

ENSMUST00000087435

Name

Bmpr2-201

Strand

Biotype

protein_coding

Start-end positions

59763400-59879014

CDS Start-stop positions

59764653-59870485

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:12168

Aliases

2610024H22Rik,
AL117858, AW546137, BB189135,
BMP-2, BMPR-2, BMPR-II,
Bmpr2, BMPRII, BRK-3,
ENSMUSG00000067336, Gm20272, MGI:1095407,
NCBI:12168, OFF:Bmpr2

Chr 1

ORFs

117 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104710	57	ATG ...	MQR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC
302787	84	ATG ...	MKM ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
300556	84	GTG ...	VCQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
664931	57	GTG ...	VSQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
307608	78	ATG ...	MGQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
943961	69	AGG ...	RKL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
103470	45	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
651622	39	GTG ...	VHL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
939935	276	AGG ...	RRP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
356423	63	CTG ...	LDM ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
93001	63	CTG ...	LWT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, C2C12, MEF
116000	81	ATG ...	MDM ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Brain, Glioma, Liver, MEF, MESC
198235	48	CTG ...	LDN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC
377922	39	CTG ...	LHS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC
641712	54	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
398593	36	TTG ...	LAQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
384803	78	TTG ...	LKT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
160934	99	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
956709	45	AAG ...	KQA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
20083	33	ATG ...	MKP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
149478	66	TTG ...	LCP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
401937	36	TTG ...	LKT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
411586	66	ATT ...	IWG ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
652580	36	CTG ...	LAM ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
270140	63	ATG ...	MGE ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC
1492514	36	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
362654	45	CTG ...	LGP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
400272	57	CTG ...	LLC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC
409313	75	ATG ...	MRA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	sORF Upstream	Brain, Glioma, Liver, MEF, MESC
337163	36	GTG ...	VIP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
346576	30	GTG ...	VQI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
412801	246	GTG ...	VFR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, C2C12
387192	201	CTG ...	LHC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
947998	270	AGG ...	RCF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
123739	147	ATG ...	MFR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, NSC
314206	39	TTG ...	LGK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
539986	90	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
741061	99	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1529213	30	TTG ...	LDS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
142843	111	ATG ...	MNA ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
374153	66	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
399047	30	GTG ...	VLR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
138518	123	CTG ...	LLC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
664773	87	GTG ...	VTG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
653613	240	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14
932866	99	AGG ...	REI ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
121940	138	CTG ...	LYQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1543866	36	ATG ...	MRL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
1728440	30	ATG ...	MMK ...	Predicted Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Mackowiak2015 Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
94084	72	ATG ...	MLL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC
949808	222	AAG ...	KEA ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF Upstream	BMDC
55219	39	GTG ...	VEF ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, MEF, Neutrophil, NSC, Testis, v6-5
301049	93	CTG ...	LSS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, Liver
344550	63	TTG ...	LCP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
407460	135	CTG ...	LYQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
307545	30	CTG ...	LSI ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, NSC
364910	42	TTG ...	LHS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1500338	42	ATG ...	MPM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
363364	48	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
145834	93	ATG ...	MFQ ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
379998	81	TTG ...	LQG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
342625	102	GTG ...	VRV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
300786	45	CTG ...	LPF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
107553	180	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
962661	36	ACG ...	TAI ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
960901	252	ATT ...	IYF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
133814	84	TTG ...	LRI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
320936	42	ATG ...	MVC ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
686446	48	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
345698	33	CTG ...	LQT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
385581	48	CTG ...	LEI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
150727	144	GTG ...	VNL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
387201	75	ATG ...	MPS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, Liver
96316	63	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
398549	96	CTG ...	LSD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF
1202448	63	ACG ...	TGG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
378758	78	CTG ...	LMF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
541028	114	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
130032	75	GTG ...	VLW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
375777	63	TTG ...	LDG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
122630	93	ATG ...	MFW ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
346773	87	CTG ...	LRC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
409302	114	ATG ...	MND ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
143784	102	TTG ...	LET ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
314509	81	TTG ...	LRI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
351998	93	ATG ...	MAV ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
33604	66	ATG ...	MEA ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, BMDC, Brain, C2C12, Glioma, Liver, MEF, MESC, NSC, Testis, v6-5
1205329	84	ATT ...	IRS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
367070	54	CTG ...	LCT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC
92725	30	CTG ...	LMR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
699769	42	ATG ...	MAN ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
397420	30	ATG ...	MKK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
363730	30	ATG ...	MFW ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
290635	30	CTG ...	LQW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, MEF
317607	54	TTG ...	LIR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
97810	69	ATG ...	MRH ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
318630	36	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
1497036	36	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
410283	45	TTG ...	LQR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, NSC
359256	57	ATG ...	MFS ...	Predicted Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Mackowiak2015 Johnstone2016	Alternative sORF Upstream	BMDC, Brain, E14, Glioma, Liver, MEF, MESC
363228	144	ATG ...	MFR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
251649	33	CTG ...	LGH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
651963	75	ATG ...	MFH ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
110120	63	GTG ...	VGE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
347959	90	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
373118	42	ATG ...	MTA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
33174	78	GTG ...	VDS ...	Ribo-seq	GTG	strong	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, Liver, MEF, NSC, Testis, v6-5
322237	66	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
21289	42	ATG ...	MVE ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Testis, v6-5
729659	204	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC
312893	51	TTG ...	LET ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
679433	213	GTG ...	VSG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
396157	108	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
130626	102	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
55975	87	GTG ...	VIR ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver, MEF, Neutrophil, NSC, Testis
331898	57	CTG ...	LRL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, NSC
309421	141	GTG ...	VNL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain

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