Transcript 193831

Transcript

ID CARD

MetamORF ID

193831

ENSMUST00000048774

Name

Copg2-201

Strand

Biotype

protein_coding

Start-end positions

30747554-30896739

CDS Start-stop positions

30748857-30896697

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:54160

Aliases

AW227625,
Copg2, ENSMUSG00000025607, gamma-2-COP,
MGI:1858683, NCBI:54160, OFF:Copg2

Chr 6

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
206584	54	CTG ...	LPG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
194589	42	CAT ...	HCG ...	Ribo-seq	CAT	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1093251	54	CCC ...	PSE ...	Ribo-seq	CCC	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
1095811	69	CTT ...	LFF ...	Ribo-seq	CTT		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1317365	108	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1246293	162	ATT ...	IPM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
204651	54	ATA ...	IQK ...	Ribo-seq	ATA	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1091824	33	CTT ...	LFF ...	Ribo-seq	CTT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
201971	60	GCA ...	AAY ...	Ribo-seq	GCA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
530248	72	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1094570	51	TCG ...	SEA ...	Ribo-seq	TCG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
209052	141	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
209083	81	AGC ...	SQE ...	Ribo-seq	AGC		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1247959	72	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
582260	126	CTT ...	LRK ...	Ribo-seq	CTT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
911238	84	ATT ...	IWR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1096605	60	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
3326	39	TGG ...	WSW ...	Ribo-seq	TGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
207348	171	ATG ...	MKV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1514837	96	GAG ...	EHC ...	Ribo-seq	GAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
2626	42	TGG ...	WSW ...	Ribo-seq	TGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1248288	69	TTG ...	LVC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
528819	57	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
193830	144	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
207149	93	TCC ...	SLT ...	Ribo-seq	TCC		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1668959	30	ATG ...	MIG ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1248553	126	ATG ...	MKC ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
199532	54	TTT ...	FLI ...	Ribo-seq	TTT		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
908021	36	AGG ...	RNM ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1066569	48	ATG ...	MKM ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil, v6-5
1242815	54	GTG ...	VRG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
195286	57	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1246739	156	ATG ...	MKC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1095047	33	ATG ...	MKM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1561635	33	ATG ...	MTY ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1249152	132	ATT ...	IPM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
528171	45	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5

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