Transcript 193187

Transcript

ID CARD

MetamORF ID

193187

ENSMUST00000203578

Name

Arpc4-203

Strand

Biotype

protein_coding

Start-end positions

113378147-113389652

CDS Start-stop positions

113384118-113388776

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:68089

Aliases

20kDa,
5330419I20Rik, AI327076, Arpc4,
ENSMUSG00000079426, MGI:1915339, NCBI:68089,
OFF:Arpc4, p20-Arc

Chr 6

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1668426	51	CTG ...	LLP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1687949	126	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
197515	81	CTG ...	LSP ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
201678	42	TTG ...	LKA ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, v6-5
203764	72	ATG ...	MTS ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, NSC, v6-5
200726	33	ATG ...	MPT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
1688598	120	CTG ...	LPH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
204397	99	CTG ...	LLW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, MEF
1092251	36	TTG ...	LKP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	MEF, v6-5
1667205	36	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
206107	39	TTG ...	LRR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver, MEF, NSC, v6-5
195693	105	ATG ...	MCL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, MEF
1668584	69	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
68334	144	CTG ...	LLL ...	Ribo-seq	CTG		10	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
206178	45	ATG ...	MKL ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
193186	63	ATG ...	MRR ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5

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