Transcript 192288

Transcript

ID CARD

MetamORF ID

192288

ENSMUST00000032194

Name

Bhlhe40-201

Strand

Biotype

protein_coding

Start-end positions

108660629-108666925

CDS Start-stop positions

108660913-108665332

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:20893

Aliases

Bhlhb2,
Bhlhe40, C130042M06Rik, Clast5,
CR8, Dec1, ENSMUSG00000030103,
MGI:1097714, NCBI:20893, OFF:Bhlhe40,
Sharp2, Stra13, Stra14

Chr 6

ORFs

44 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
198173	210	GTG ...	VTR ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell
210084	144	CTG ...	LLA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver
3175	48	GTG ...	VRY ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, NSC, Spleen_B_cell
205029	192	GTG ...	VAM ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
583808	108	CTG ...	LAS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
527584	30	CTG ...	LLR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Spleen_B_cell
202435	126	ATG ...	MDA ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell
205346	264	GTG ...	VCQ ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell
527064	57	GTG ...	VQS ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, Neutrophil, Spleen_B_cell
579961	174	TTG ...	LAR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
3320	57	GTG ...	VHC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, NSC, v6-5
836879	48	TTG ...	LPC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14
201057	228	GTG ...	VGS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Spleen_B_cell
2985	33	GTG ...	VTG ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, R1E, v6-5
836314	120	GTG ...	VCR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
198421	186	ATG ...	MEV ...	Ribo-seq	ATG	strong	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
3228	54	GTG ...	VPV ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell
199488	258	ATG ...	MLV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC
576593	129	CTG ...	LCA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Liver
207066	147	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, MEF
909640	75	ACG ...	TPP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
1243896	165	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
196878	276	CTG ...	LGK ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Spleen_B_cell
837718	165	TTG ...	LGH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver
2779	48	TTG ...	LRK ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF, v6-5
206384	99	GTG ...	VSA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
2585	51	GTG ...	VVL ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, NSC
203339	42	TTG ...	LPT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
204182	75	GTG ...	VWS ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF
582513	72	CTG ...	LKR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
200737	255	CTG ...	LVP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Downstream Overlapping sORF	BMDC, Brain, E14
2729	48	GTG ...	VLP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver
577554	102	GTG ...	VGT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
582782	114	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
199883	60	CTG ...	LCA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Spleen_B_cell
837622	72	TTG ...	LIS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14
203546	240	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Spleen_B_cell
3192	117	GTG ...	VIC ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, NSC, Spleen_B_cell
581519	60	CTG ...	LCQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver
576261	111	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14, Liver
204634	102	CTG ...	LPT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver
192287	180	GTG ...	VNW ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver
1248543	198	AGG ...	RAA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
194950	153	GTG ...	VSS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, Spleen_B_cell

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