Transcript 19147 | MetamORF

Transcript

ID CARD

MetamORF ID

19147

ENSMUST00000140700

Name

Nudcd3-204

Strand

Biotype

retained_intron

Start-end positions

6122925-6193476

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:209586

Aliases

AI427847,
BC024322, ENSMUSG00000053838, MGI:2144158,
mKIAA1068, NCBI:209586, Nudcd3,
OFF:Nudcd3

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1289731	48	AAG ...	KQV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1290960	39	AGG ...	RPR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
297460	48	TTG ...	LIT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
642408	129	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
19146	186	GTG ...	VQE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
1393887	153	TTG ...	LSG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
19924	90	GTG ...	VTH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Testis
1392790	198	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1395104	228	TTG ...	LPA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1286332	213	GTG ...	VEE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
1288095	75	AGG ...	RGS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
653844	87	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1126505	78	CTG ...	LEK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, Liver, v6-5
1286962	216	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1292719	60	GTG ...	VMK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
296211	93	CTG ...	LTV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Liver
1284529	258	ATA ...	IRK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
310539	78	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver

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