Transcript 18980 | MetamORF

Transcript

ID CARD

MetamORF ID

18980

ENSMUST00000182288

Name

Prrc2c-203

Strand

Biotype

retained_intron

Start-end positions

162719892-162740497

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:226562

Aliases

1810043M20Rik,
9630039I18Rik, A630006J20, Bat2d,
Bat2d1, Bat2l2, E130112L15Rik,
ENSMUSG00000040225, MGI:1913754, mKIAA1096,
NCBI:226562, OFF:Prrc2c, Prrc2c,
Prrc3

Chr 1

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
941807	81	ATC ...	ISP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
962959	150	ATG ...	MQH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
51008	63	CTG ...	LIR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
24085	87	ATG ...	MSF ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12, MEF, Testis
31476	81	TTG ...	LVF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
908464	48	AAG ...	KSW ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
90482	54	CTG ...	LLT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
467122	129	CTG ...	LRT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
945905	30	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
36109	150	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
919162	162	ATG ...	MGR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	BMDC
917314	138	ACG ...	TAV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
957325	111	AAG ...	KSG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
939983	75	AAG ...	KYA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
942986	57	AGG ...	RPE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
460597	168	TTG ...	LYG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
326265	105	ATG ...	MGY ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
939350	123	ACG ...	TVS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
18979	69	CTG ...	LTL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
41622	132	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
800534	66	TTG ...	LEA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC

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