Transcript 18753 | MetamORF

Transcript

ID CARD

MetamORF ID

18753

ENSMUST00000138280

Name

Cops7b-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

86587131-86606326

CDS Start-stop positions

86589180-86596777

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:26895

Aliases

Cops7b,
D1Wsu66e, E130114M23, ENSMUSG00000026240,
MGI:1349388, NCBI:26895, OFF:Cops7b

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1842609	39	CTG ...	LSR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
687772	30	TTG ...	LPM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
649161	45	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
35231	66	TTG ...	LLN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
317515	99	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	R1E
40208	63	CTG ...	LNL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
296786	75	GTG ...	VDF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
715869	39	TTG ...	LEN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
398465	192	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Spleen_B_cell
359048	75	GTG ...	VYP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1844384	33	GTG ...	VLD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	R1E
314718	108	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	R1E
1844589	30	CTG ...	LDA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	R1E
379167	177	CTG ...	LEM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Spleen_B_cell
112877	189	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Spleen_B_cell
736836	57	ATG ...	MSG ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
301238	39	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, R1E
35722	102	CTG ...	LDQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Testis
294943	93	GTG ...	VAQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
18752	57	CTG ...	LFA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E, Testis
26873	93	CTG ...	LAE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Testis
645598	48	GTG ...	VNR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, v6-5
1853333	72	TTG ...	LQL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
27059	30	GTG ...	VKG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Testis
718550	54	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E
407262	186	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E, Spleen_B_cell
328430	81	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E

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