Transcript 187114

Transcript

ID CARD

MetamORF ID

187114

ENSMUST00000112939

Name

Hnrnpd-203

Strand

Biotype

protein_coding

Start-end positions

99960998-99978917

CDS Start-stop positions

99962545-99978624

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:11991

Aliases

Auf1,
ENSMUSG00000000568, Hnrnpd, Hnrpd,
MGI:101947, NCBI:11991, OFF:Hnrnpd

Chr 5

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
186512	153	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
1241234	216	ATT ...	IGI ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
568868	42	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
67094	261	GTG ...	VLQ ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, R1E
64334	90	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC
188062	162	ATG ...	MED ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
65906	258	CTG ...	LRE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil
1242072	231	AGG ...	RDI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
833831	30	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
172653	39	ATG ...	MGK ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
574186	282	TTG ...	LQA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC, R1E
517367	144	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	MEF
67453	192	ATG ...	MDI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Downstream Overlapping sORF	Brain, E14, NSC
522871	87	GTG ...	VGG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
524789	144	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream Overlapping sORF	NSC
180719	132	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
67242	201	ATG ...	MAT ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Downstream Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E
1853	63	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
66597	258	CTG ...	LQA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, BMDC, MEF, Neutrophil, NSC, R1E
172570	57	CTG ...	LSK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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