Transcript 18519 | MetamORF

Transcript

ID CARD

MetamORF ID

18519

ENSMUST00000127530

Name

Grn-204

Strand

Biotype

retained_intron

Start-end positions

102435306-102436064

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:14824

Aliases

ENSMUSG00000034708,
epithelin, GP88, Grn,
MGI:95832, NCBI:14824, OFF:Grn,
PCDGF, PEPI, Pgrn

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
307171	150	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
310420	108	ATG ...	MSG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
932760	141	AGG ...	RAS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
640512	87	CTG ...	LRN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
294589	129	TTG ...	LLP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
90723	192	CTG ...	LEK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
308560	87	GTG ...	VMT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
307938	192	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
446766	90	CTG ...	LSE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
935066	57	ATA ...	IPA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
312174	177	CTG ...	LSA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
292711	84	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
19930	129	CTG ...	LPD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E, Testis
18518	201	GTG ...	VAG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Testis
294763	126	CTG ...	LPS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
291817	195	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
293909	147	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
20914	111	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Liver, R1E, Testis
650823	87	CTG ...	LAW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
936150	39	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
934965	120	AGG ...	RGT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
297301	99	GTG ...	VIH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Liver

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