Transcript 1851 | MetamORF

Transcript

ID CARD

MetamORF ID

1851

ENSMUST00000202854

Name

Cct6a-207

Strand

Biotype

retained_intron

Start-end positions

129789681-129792057

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:12466

Aliases

CCT-zeta,
CCT-zeta-1, Cct6, Cct6a,
Cctz-1, ENSMUSG00000029447, MGI:107943,
NCBI:12466, OFF:Cct6a, TCP-1-zeta

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1234345	30	ATA ...	INL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1063516	42	CTG ...	LKE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
62435	195	TTG ...	LSF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
1239522	42	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1236931	81	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
560082	36	TTG ...	LFW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver
64040	168	GTG ...	VNS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF
1085721	42	CTG ...	LGF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
831622	60	CTG ...	LKV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Liver
1237058	60	AAG ...	KQR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
63699	96	TTG ...	LDH ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, MEF
1235495	45	ATT ...	ILG ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1235545	51	AAG ...	KSV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1236281	57	AAG ...	KVL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
832452	51	TTG ...	LKR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Liver
1850	132	TTG ...	LTL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, MEF, Skin_tumor
63587	69	ATG ...	MKK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, B_cell
1234930	147	AAG ...	KSA ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
64935	39	ATG ...	MEM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, MEF
180121	57	ATG ...	MWR ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver, MEF
1240858	39	AAG ...	KKR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
903757	42	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
65919	57	GTG ...	VEN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14
1236969	66	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
2103	90	TTG ...	LAI ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver, Skin_tumor
2145	102	GTG ...	VDS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver, Skin_tumor, Testis
63265	51	ATG ...	MVE ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver
1237999	48	AAG ...	KRQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
64514	162	ATG ...	MYI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	B_cell
62804	33	ATG ...	MKH ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, Liver
977536	63	ATT ...	IDL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
871731	33	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver

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