Transcript 18486 | MetamORF

Transcript

ID CARD

MetamORF ID

18486

ENSMUST00000132666

Name

Sf3a1-203

Strand

Biotype

retained_intron

Start-end positions

4160355-4171913

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:67465

Aliases

1200014H24Rik,
5930416L09Rik, AI159724, ENSMUSG00000002129,
MGI:1914715, NCBI:67465, OFF:Sf3a1,
Sf3a1

Chr 11

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19320	42	GTG ...	VEQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
20551	123	CTG ...	LMQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Testis
20003	87	TTG ...	LSL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Neutrophil, Testis
307933	54	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
449447	111	TTG ...	LSS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil
1286065	48	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
91475	132	CTG ...	LTQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Testis
995621	45	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1291831	33	AGG ...	RLI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
21966	96	TTG ...	LSP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, Neutrophil, Testis
1288512	72	ATA ...	ILR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
311397	33	CTG ...	LKI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
18629	60	GTG ...	VIF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
1291841	144	ATC ...	IVK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1287636	111	AGG ...	RLR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1287441	42	AGG ...	RPD ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
935540	90	ATC ...	ILS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
419505	123	ATT ...	IEE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
303558	66	ATG ...	MGL ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
1284378	150	AGG ...	RNG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
90644	75	GTG ...	VVG ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
19103	186	CTG ...	LDV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell, Testis
641074	57	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
91075	177	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell, Testis
21951	81	TTG ...	LSW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Testis
301737	60	CTG ...	LNL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
446927	54	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1287764	102	AAG ...	KED ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
91246	270	GTG ...	VIQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell, Testis
1285252	57	ATC ...	IFN ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
18485	171	CTG ...	LTA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell, Testis
21621	63	GTG ...	VVI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Testis
21941	156	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
1286469	36	AGG ...	RLK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
419291	159	AAG ...	KHR ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Intronic sORF	C2C12, E14
418799	165	AAG ...	KKK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	C2C12
298852	33	ATG ...	MRS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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