Transcript 18446 | MetamORF

Transcript

ID CARD

MetamORF ID

18446

ENSMUST00000108425

Name

Crk-203

Strand

Biotype

protein_coding

Start-end positions

75679284-75706908

CDS Start-stop positions

75679424-75703373

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:12928

Aliases

c-Crk,
Crk, Crk-I, Crk-II,
Crk-III, Crk3, CrkIII,
Crko, ENSMUSG00000017776, MGI:88508,
NCBI:12928, OFF:Crk, p38

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22053	75	GTG ...	VKA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Neutrophil, Testis
91493	129	CTG ...	LVK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Testis
21059	36	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Neutrophil, Testis
1290877	33	AGG ...	RSG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452736	39	ATG ...	MKK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
304924	51	CTG ...	LLY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
292801	63	TTG ...	LIH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
303606	54	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
292435	66	GTG ...	VEC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1122876	99	ATG ...	MAN ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	E14
301697	42	ATG ...	MMK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
931559	54	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
294564	108	CTG ...	LGP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
21383	105	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Testis
448708	48	ATG ...	MGM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1446523	57	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
18445	39	CTG ...	LLD ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Neutrophil, Testis
1289194	111	ATT ...	INV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	E14
298305	114	CTG ...	LVL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
646995	72	ATG ...	MCG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
300436	108	CTG ...	LEG ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Neutrophil

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